3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
8EMM|1|a|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_131 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.0511
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|C|1686
8EMM|1|a|G|1687
8EMM|1|a|U|1688
8EMM|1|a|A|1689
8EMM|1|a|A|1690
8EMM|1|a|C|1691
*
8EMM|1|a|G|1696
8EMM|1|a|G|1697
8EMM|1|a|A|1698
8EMM|1|a|G|1699
8EMM|1|a|A|1700
8EMM|1|a|A|1701
8EMM|1|a|G|1702

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2082 s