3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8EMM|1|a|A|1938, 8EMM|1|a|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_141 not in the Motif Atlas
Homologous match to IL_5J7L_319
Geometric discrepancy: 0.0634
The information below is about IL_5J7L_319
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

8EMM|1|a|C|1934
8EMM|1|a|G|1935
8EMM|1|a|A|1936
8EMM|1|a|A|1937
8EMM|1|a|A|1938
8EMM|1|a|5MU|1939
8EMM|1|a|U|1940
8EMM|1|a|C|1941
8EMM|1|a|C|1942
8EMM|1|a|U|1943
8EMM|1|a|U|1944
8EMM|1|a|G|1945
*
8EMM|1|a|C|1961
8EMM|1|a|5MC|1962
8EMM|1|a|U|1963
8EMM|1|a|G|1964

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain Y
Transfer RNA; tRNA
Chain c
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0754 s