IL_8EMM_153
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AGG*CA(OMC)CU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EMM_153 not in the Motif Atlas
- Homologous match to IL_5J7L_335
- Geometric discrepancy: 0.0649
- The information below is about IL_5J7L_335
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EMM|1|a|A|2453
8EMM|1|a|G|2454
8EMM|1|a|G|2455
*
8EMM|1|a|C|2496
8EMM|1|a|A|2497
8EMM|1|a|OMC|2498
8EMM|1|a|C|2499
8EMM|1|a|U|2500
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain d
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L16
- Chain v
- 50S ribosomal protein L27
Coloring options: