IL_8EMM_154

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_154 not in the Motif Atlas

Homologous match to IL_5J7L_336

Geometric discrepancy: 0.1047

The information below is about IL_5J7L_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EMM|1|a|C|2456
8EMM|1|a|PSU|2457
8EMM|1|a|G|2458
8EMM|1|a|A|2459
*
8EMM|1|a|U|2493
8EMM|1|a|G|2494
8EMM|1|a|G|2495

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27