IL_8EMM_187

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GG*CA(OMC)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_187 not in the Motif Atlas

Homologous match to IL_9DFE_092

Geometric discrepancy: 0.0546

The information below is about IL_9DFE_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8EMM|1|a|G|2454
8EMM|1|a|G|2455
*
8EMM|1|a|C|2496
8EMM|1|a|A|2497
8EMM|1|a|OMC|2498

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27