IL_8EUB_018

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_018 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.131

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8EUB|1|A1|A|417
8EUB|1|A1|A|418
8EUB|1|A1|G|419
*
8EUB|1|A4|C|4
8EUB|1|A4|U|5
8EUB|1|A4|U|6

Current chains

Chain A1

28S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A