IL_8EUB_020

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CAGACAGG*CAUAAUG

Length

15 nucleotides

Bulged bases

8EUB|1|A1|A|438, 8EUB|1|A1|A|440

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|C|435
8EUB|1|A1|A|436
8EUB|1|A1|G|437
8EUB|1|A1|A|438
8EUB|1|A1|C|439
8EUB|1|A1|A|440
8EUB|1|A1|G|494
8EUB|1|A1|G|495
*
8EUB|1|A1|C|618
8EUB|1|A1|A|619
8EUB|1|A1|U|620
8EUB|1|A1|A|621
8EUB|1|A1|A|622
8EUB|1|A1|U|623
8EUB|1|A1|G|624

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AP

60S ribosomal protein L17-A

Chain Ae

RPL32 isoform 1

Chain Af

60S ribosomal protein L33-A