IL_8EUB_060

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8EUB|1|A1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_060 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1842

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8EUB|1|A1|G|1262
8EUB|1|A1|A|1263
8EUB|1|A1|G|1264
8EUB|1|A1|U|1265
8EUB|1|A1|G|1266
*
8EUB|1|A1|C|1275
8EUB|1|A1|U|1276
8EUB|1|A1|C|1277

Current chains

Chain A1

28S rRNA

Nearby chains

Chain VA

60S acidic ribosomal protein P0