IL_8EUB_139

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8EUB|1|A1|U|3198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_139 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1792

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8EUB|1|A1|C|3193
8EUB|1|A1|C|3194
*
8EUB|1|A1|G|3197
8EUB|1|A1|U|3198
8EUB|1|A1|G|3199

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AM

60S ribosomal protein L14-A