IL_8EUB_188

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CAGGGCC*GGUCUUG

Length

14 nucleotides

Bulged bases

8EUB|1|B5|G|498

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|C|484
8EUB|1|B5|A|485
8EUB|1|B5|G|486
8EUB|1|B5|G|487
8EUB|1|B5|G|488
8EUB|1|B5|C|489
8EUB|1|B5|C|490
*
8EUB|1|B5|G|497
8EUB|1|B5|G|498
8EUB|1|B5|U|499
8EUB|1|B5|C|500
8EUB|1|B5|U|501
8EUB|1|B5|U|502
8EUB|1|B5|G|503

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Be

40S ribosomal protein S30-A