IL_8EUB_205

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8EUB|1|B5|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_205 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0904

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8EUB|1|B5|G|867
8EUB|1|B5|G|868
8EUB|1|B5|A|869
8EUB|1|B5|C|870
*
8EUB|1|B5|G|957
8EUB|1|B5|U|958
8EUB|1|B5|U|959
8EUB|1|B5|U|960
8EUB|1|B5|U|961

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ac

60S ribosomal protein L30

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27-A