IL_8EUB_253

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_253 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.1367

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8EUB|1|B5|C|1772
8EUB|1|B5|4AC|1773
8EUB|1|B5|G|1774
*
8EUB|1|B5|C|1787
8EUB|1|B5|G|1788
8EUB|1|B5|G|1789

Current chains

Chain B5

18S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain BO

40S ribosomal protein S14-A

Chain Ba

RPS26B isoform 1