IL_8EUB_254

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GUUUG*CGUACGUGUAC

Length

16 nucleotides

Bulged bases

8EUB|1|EC|A|6849

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|EC|G|6833
8EUB|1|EC|U|6834
8EUB|1|EC|U|6835
8EUB|1|EC|U|6836
8EUB|1|EC|G|6837
*
8EUB|1|EC|C|6846
8EUB|1|EC|G|6847
8EUB|1|EC|U|6848
8EUB|1|EC|A|6849
8EUB|1|EC|C|6850
8EUB|1|EC|G|6851
8EUB|1|EC|U|6852
8EUB|1|EC|G|6853
8EUB|1|EC|U|6854
8EUB|1|EC|A|6855
8EUB|1|EC|C|6856

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain BF

Rps5p