IL_8EUB_261

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGUGGC*GAAUCC

Length

12 nucleotides

Bulged bases

8EUB|1|A1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|G|1233
8EUB|1|A1|G|1234
8EUB|1|A1|U|1235
8EUB|1|A1|G|1236
8EUB|1|A1|G|1237
8EUB|1|A1|C|1238
*
8EUB|1|A1|G|1250
8EUB|1|A1|A|1251
8EUB|1|A1|A|1252
8EUB|1|A1|U|1253
8EUB|1|A1|C|1254
8EUB|1|A1|C|1255

Current chains

Chain A1

28S rRNA

Nearby chains

Chain VA

60S acidic ribosomal protein P0