IL_8EUB_265
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_265 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.057
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8EUB|1|A1|G|1898
8EUB|1|A1|G|1899
8EUB|1|A1|A|1900
8EUB|1|A1|A|1901
8EUB|1|A1|G|1902
8EUB|1|A1|U|1903
8EUB|1|A1|C|1904
8EUB|1|A1|G|1905
8EUB|1|A1|G|1906
*
8EUB|1|A1|C|2333
8EUB|1|A1|U|2334
8EUB|1|A1|G|2335
8EUB|1|A1|U|2336
8EUB|1|A1|OMC|2337
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AV
- 60S ribosomal protein L23-A
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