IL_8EUB_267

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GUGUAGAAUAAGUGG*CCACUAC

Length

22 nucleotides

Bulged bases

8EUB|1|A1|U|2453, 8EUB|1|A1|G|2457, 8EUB|1|A1|A|2458, 8EUB|1|A1|A|2459, 8EUB|1|A1|U|2460, 8EUB|1|A1|A|2461, 8EUB|1|A1|U|2493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|G|2452
8EUB|1|A1|U|2453
8EUB|1|A1|G|2454
8EUB|1|A1|U|2455
8EUB|1|A1|A|2456
8EUB|1|A1|G|2457
8EUB|1|A1|A|2458
8EUB|1|A1|A|2459
8EUB|1|A1|U|2460
8EUB|1|A1|A|2461
8EUB|1|A1|A|2462
8EUB|1|A1|G|2463
8EUB|1|A1|U|2464
8EUB|1|A1|G|2465
8EUB|1|A1|G|2466
*
8EUB|1|A1|C|2489
8EUB|1|A1|C|2490
8EUB|1|A1|A|2491
8EUB|1|A1|C|2492
8EUB|1|A1|U|2493
8EUB|1|A1|A|2494
8EUB|1|A1|C|2495

Current chains

Chain A1

28S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA