IL_8EUB_275

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8EUB|1|B5|A|707, 8EUB|1|B5|G|712, 8EUB|1|B5|U|715, 8EUB|1|B5|C|716, 8EUB|1|B5|C|724, 8EUB|1|B5|C|726, 8EUB|1|B5|G|729, 8EUB|1|B5|C|731, 8EUB|1|B5|G|732, 8EUB|1|B5|A|733, 8EUB|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|G|703
8EUB|1|B5|C|704
8EUB|1|B5|U|705
8EUB|1|B5|A|706
8EUB|1|B5|A|707
8EUB|1|B5|C|708
8EUB|1|B5|C|709
8EUB|1|B5|U|710
8EUB|1|B5|U|711
8EUB|1|B5|G|712
8EUB|1|B5|A|713
8EUB|1|B5|G|714
8EUB|1|B5|U|715
8EUB|1|B5|C|716
8EUB|1|B5|C|717
*
8EUB|1|B5|G|723
8EUB|1|B5|C|724
8EUB|1|B5|U|725
8EUB|1|B5|C|726
8EUB|1|B5|U|727
8EUB|1|B5|U|728
8EUB|1|B5|G|729
8EUB|1|B5|G|730
8EUB|1|B5|C|731
8EUB|1|B5|G|732
8EUB|1|B5|A|733
8EUB|1|B5|A|734
8EUB|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A