IL_8EUB_276

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

ACGUUUGGUUC*GGACCAUCGU

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|A|817
8EUB|1|B5|C|818
8EUB|1|B5|G|819
8EUB|1|B5|U|820
8EUB|1|B5|U|821
8EUB|1|B5|U|822
8EUB|1|B5|G|823
8EUB|1|B5|G|824
8EUB|1|B5|U|825
8EUB|1|B5|U|826
8EUB|1|B5|C|827
*
8EUB|1|B5|G|845
8EUB|1|B5|G|846
8EUB|1|B5|A|847
8EUB|1|B5|C|848
8EUB|1|B5|C|849
8EUB|1|B5|A|850
8EUB|1|B5|U|851
8EUB|1|B5|C|852
8EUB|1|B5|G|853
8EUB|1|B5|U|854

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BH

40S ribosomal protein S7-A

Chain BL

40S ribosomal protein S11-A