IL_8EUB_282

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UGUAUUGGUUACCCAUCU*AGUAAGGCUUUCA

Length

31 nucleotides

Bulged bases

8EUB|1|EC|U|6770, 8EUB|1|EC|U|6771, 8EUB|1|EC|U|6774, 8EUB|1|EC|U|6821, 8EUB|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|EC|U|6766
8EUB|1|EC|G|6767
8EUB|1|EC|U|6768
8EUB|1|EC|A|6769
8EUB|1|EC|U|6770
8EUB|1|EC|U|6771
8EUB|1|EC|G|6772
8EUB|1|EC|G|6773
8EUB|1|EC|U|6774
8EUB|1|EC|U|6775
8EUB|1|EC|A|6776
8EUB|1|EC|C|6777
8EUB|1|EC|C|6778
8EUB|1|EC|C|6779
8EUB|1|EC|A|6780
8EUB|1|EC|U|6781
8EUB|1|EC|C|6782
8EUB|1|EC|U|6783
*
8EUB|1|EC|A|6813
8EUB|1|EC|G|6814
8EUB|1|EC|U|6815
8EUB|1|EC|A|6816
8EUB|1|EC|A|6817
8EUB|1|EC|G|6818
8EUB|1|EC|G|6819
8EUB|1|EC|C|6820
8EUB|1|EC|U|6821
8EUB|1|EC|U|6822
8EUB|1|EC|U|6823
8EUB|1|EC|C|6824
8EUB|1|EC|A|6825

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1