IL_8EV6_353

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_353 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0985

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8EV6|1|2a|C|1431
8EV6|1|2a|G|1432
8EV6|1|2a|A|1433
8EV6|1|2a|A|1434
8EV6|1|2a|G|1435
*
8EV6|1|2a|C|1466
8EV6|1|2a|G|1467
8EV6|1|2a|A|1468
8EV6|1|2a|G|1469

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20