IL_8EV6_381

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8EV6|1|1A|U|2154, 8EV6|1|1A|A|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_381 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5044

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8EV6|1|1A|C|2151
8EV6|1|1A|U|2152
8EV6|1|1A|G|2153
8EV6|1|1A|U|2154
8EV6|1|1A|G|2155
8EV6|1|1A|A|2156
8EV6|1|1A|A|2157
8EV6|1|1A|C|2158
*
8EV6|1|1A|G|2177
8EV6|1|1A|G|2178
8EV6|1|1A|G|2179
8EV6|1|1A|A|2180
8EV6|1|1A|G|2181

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains