IL_8EV7_242

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8EV7|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV7_242 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1259

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8EV7|1|2A|C|1686
8EV7|1|2A|G|1687
8EV7|1|2A|U|1688
8EV7|1|2A|A|1689
8EV7|1|2A|A|1690
8EV7|1|2A|C|1691
*
8EV7|1|2A|G|1696
8EV7|1|2A|G|1697
8EV7|1|2A|A|1698
8EV7|1|2A|G|1699
8EV7|1|2A|A|1700
8EV7|1|2A|A|1701
8EV7|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA