IL_8EVQ_040

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8EVQ|1|A1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_040 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0936

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8EVQ|1|A1|A|983
8EVQ|1|A1|G|984
8EVQ|1|A1|U|985
*
8EVQ|1|A1|A|1099
8EVQ|1|A1|U|1100

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AQ

60S ribosomal protein L18-A

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1