IL_8EVQ_042

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_042 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.1574

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8EVQ|1|A1|A|997
8EVQ|1|A1|A|998
*
8EVQ|1|A1|U|1050
8EVQ|1|A1|U|1051
8EVQ|1|A1|U|1052

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AD

RPL5 isoform 1

Chain AI

RPL10 isoform 1

Chain AT

60S ribosomal protein L21-A