IL_8EVQ_060

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8EVQ|1|A1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_060 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1565

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8EVQ|1|A1|G|1262
8EVQ|1|A1|A|1263
8EVQ|1|A1|G|1264
8EVQ|1|A1|U|1265
8EVQ|1|A1|G|1266
*
8EVQ|1|A1|C|1275
8EVQ|1|A1|U|1276
8EVQ|1|A1|C|1277

Current chains

Chain A1

25S rRNA

Nearby chains

Chain V

60S acidic ribosomal protein P0