IL_8EVQ_191

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8EVQ|1|B5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_191 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.5493

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8EVQ|1|B5|G|557
8EVQ|1|B5|U|558
8EVQ|1|B5|C|559
*
8EVQ|1|B5|G|586
8EVQ|1|B5|C|587

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain Be

40S ribosomal protein S30-A