IL_8EVQ_271

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8EVQ|1|B5|A|707, 8EVQ|1|B5|C|708, 8EVQ|1|B5|U|711, 8EVQ|1|B5|G|712, 8EVQ|1|B5|U|715, 8EVQ|1|B5|C|716, 8EVQ|1|B5|C|726, 8EVQ|1|B5|U|727, 8EVQ|1|B5|U|728, 8EVQ|1|B5|G|729, 8EVQ|1|B5|C|731, 8EVQ|1|B5|G|732, 8EVQ|1|B5|A|733, 8EVQ|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVQ|1|B5|G|703
8EVQ|1|B5|C|704
8EVQ|1|B5|U|705
8EVQ|1|B5|A|706
8EVQ|1|B5|A|707
8EVQ|1|B5|C|708
8EVQ|1|B5|C|709
8EVQ|1|B5|U|710
8EVQ|1|B5|U|711
8EVQ|1|B5|G|712
8EVQ|1|B5|A|713
8EVQ|1|B5|G|714
8EVQ|1|B5|U|715
8EVQ|1|B5|C|716
8EVQ|1|B5|C|717
*
8EVQ|1|B5|G|723
8EVQ|1|B5|C|724
8EVQ|1|B5|U|725
8EVQ|1|B5|C|726
8EVQ|1|B5|U|727
8EVQ|1|B5|U|728
8EVQ|1|B5|G|729
8EVQ|1|B5|G|730
8EVQ|1|B5|C|731
8EVQ|1|B5|G|732
8EVQ|1|B5|A|733
8EVQ|1|B5|A|734
8EVQ|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A