IL_8EVQ_280

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

8EVQ|1|EC|U|6774, 8EVQ|1|EC|C|6777, 8EVQ|1|EC|C|6778, 8EVQ|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVQ|1|EC|U|6766
8EVQ|1|EC|G|6767
8EVQ|1|EC|U|6768
8EVQ|1|EC|A|6769
8EVQ|1|EC|U|6770
8EVQ|1|EC|U|6771
8EVQ|1|EC|G|6772
8EVQ|1|EC|G|6773
8EVQ|1|EC|U|6774
8EVQ|1|EC|U|6775
8EVQ|1|EC|A|6776
8EVQ|1|EC|C|6777
8EVQ|1|EC|C|6778
8EVQ|1|EC|C|6779
8EVQ|1|EC|A|6780
8EVQ|1|EC|U|6781
8EVQ|1|EC|C|6782
*
8EVQ|1|EC|G|6814
8EVQ|1|EC|U|6815
8EVQ|1|EC|A|6816
8EVQ|1|EC|A|6817
8EVQ|1|EC|G|6818
8EVQ|1|EC|G|6819
8EVQ|1|EC|C|6820
8EVQ|1|EC|U|6821
8EVQ|1|EC|U|6822
8EVQ|1|EC|U|6823
8EVQ|1|EC|C|6824
8EVQ|1|EC|A|6825

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1