IL_8EVR_021

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAUGUAGCU*AGUAUUAUAGC

Length

21 nucleotides

Bulged bases

8EVR|1|A1|U|534, 8EVR|1|A1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|A1|G|531
8EVR|1|A1|A|532
8EVR|1|A1|A|533
8EVR|1|A1|U|534
8EVR|1|A1|G|535
8EVR|1|A1|U|536
8EVR|1|A1|A|537
8EVR|1|A1|G|538
8EVR|1|A1|C|539
8EVR|1|A1|U|540
*
8EVR|1|A1|A|551
8EVR|1|A1|G|552
8EVR|1|A1|U|553
8EVR|1|A1|A|554
8EVR|1|A1|U|555
8EVR|1|A1|U|556
8EVR|1|A1|A|557
8EVR|1|A1|U|558
8EVR|1|A1|A|559
8EVR|1|A1|G|560
8EVR|1|A1|C|561

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

60S ribosomal protein L20