IL_8EVR_089

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8EVR|1|A1|A|2207, 8EVR|1|A1|A|2208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVR_089 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3133

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8EVR|1|A1|G|2206
8EVR|1|A1|A|2207
8EVR|1|A1|A|2208
8EVR|1|A1|U|2209
8EVR|1|A1|G|2210
*
8EVR|1|A1|C|2235
8EVR|1|A1|G|2236
8EVR|1|A1|C|2237

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA