IL_8EVR_105

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8EVR|1|A1|C|2479

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|A1|G|2466
8EVR|1|A1|G|2467
8EVR|1|A1|A|2468
8EVR|1|A1|G|2469
*
8EVR|1|A1|C|2476
8EVR|1|A1|G|2477
8EVR|1|A1|C|2478
8EVR|1|A1|C|2479
8EVR|1|A1|A|2480
8EVR|1|A1|G|2481
8EVR|1|A1|U|2482
8EVR|1|A1|G|2483
8EVR|1|A1|A|2484
8EVR|1|A1|A|2485
8EVR|1|A1|A|2486
8EVR|1|A1|U|2487
8EVR|1|A1|A|2488
8EVR|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

TSV IRES