IL_8EVR_149

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8EVR|1|A1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVR_149 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.1986

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8EVR|1|A1|G|3340
8EVR|1|A1|U|3341
8EVR|1|A1|A|3342
*
8EVR|1|A1|U|3363
8EVR|1|A1|C|3364

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AW

RPL24A isoform 1