IL_8EVR_195

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8EVR|1|B5|A|579, 8EVR|1|B5|U|581

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|B5|G|561
8EVR|1|B5|OMG|562
8EVR|1|B5|U|563
8EVR|1|B5|G|564
8EVR|1|B5|C|565
8EVR|1|B5|C|566
8EVR|1|B5|A|567
8EVR|1|B5|G|568
*
8EVR|1|B5|C|575
8EVR|1|B5|G|576
8EVR|1|B5|G|577
8EVR|1|B5|OMU|578
8EVR|1|B5|A|579
8EVR|1|B5|A|580
8EVR|1|B5|U|581
8EVR|1|B5|U|582
8EVR|1|B5|C|583
8EVR|1|B5|C|584

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A

Chain DC

Elongation factor 2