IL_8EVR_235

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8EVR|1|B5|A|706, 8EVR|1|B5|A|707, 8EVR|1|B5|C|708, 8EVR|1|B5|G|712, 8EVR|1|B5|U|715, 8EVR|1|B5|C|716, 8EVR|1|B5|C|724, 8EVR|1|B5|C|726, 8EVR|1|B5|G|729, 8EVR|1|B5|C|731, 8EVR|1|B5|G|732, 8EVR|1|B5|A|733, 8EVR|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|B5|G|703
8EVR|1|B5|C|704
8EVR|1|B5|U|705
8EVR|1|B5|A|706
8EVR|1|B5|A|707
8EVR|1|B5|C|708
8EVR|1|B5|C|709
8EVR|1|B5|U|710
8EVR|1|B5|U|711
8EVR|1|B5|G|712
8EVR|1|B5|A|713
8EVR|1|B5|G|714
8EVR|1|B5|U|715
8EVR|1|B5|C|716
8EVR|1|B5|C|717
*
8EVR|1|B5|G|723
8EVR|1|B5|C|724
8EVR|1|B5|U|725
8EVR|1|B5|C|726
8EVR|1|B5|U|727
8EVR|1|B5|U|728
8EVR|1|B5|G|729
8EVR|1|B5|G|730
8EVR|1|B5|C|731
8EVR|1|B5|G|732
8EVR|1|B5|A|733
8EVR|1|B5|A|734
8EVR|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A