IL_8EVR_238

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

8EVR|1|EC|U|6768, 8EVR|1|EC|U|6770, 8EVR|1|EC|U|6771, 8EVR|1|EC|U|6774, 8EVR|1|EC|C|6777, 8EVR|1|EC|C|6778, 8EVR|1|EC|U|6821, 8EVR|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|EC|U|6766
8EVR|1|EC|G|6767
8EVR|1|EC|U|6768
8EVR|1|EC|A|6769
8EVR|1|EC|U|6770
8EVR|1|EC|U|6771
8EVR|1|EC|G|6772
8EVR|1|EC|G|6773
8EVR|1|EC|U|6774
8EVR|1|EC|U|6775
8EVR|1|EC|A|6776
8EVR|1|EC|C|6777
8EVR|1|EC|C|6778
8EVR|1|EC|C|6779
8EVR|1|EC|A|6780
8EVR|1|EC|U|6781
8EVR|1|EC|C|6782
*
8EVR|1|EC|G|6814
8EVR|1|EC|U|6815
8EVR|1|EC|A|6816
8EVR|1|EC|A|6817
8EVR|1|EC|G|6818
8EVR|1|EC|G|6819
8EVR|1|EC|C|6820
8EVR|1|EC|U|6821
8EVR|1|EC|U|6822
8EVR|1|EC|U|6823
8EVR|1|EC|C|6824
8EVR|1|EC|A|6825

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1