IL_8EVR_239

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUACCAUAGG*CCAAAAACA

Length

20 nucleotides

Bulged bases

8EVR|1|EC|A|6873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|EC|U|6852
8EVR|1|EC|G|6853
8EVR|1|EC|U|6854
8EVR|1|EC|A|6855
8EVR|1|EC|C|6856
8EVR|1|EC|C|6857
8EVR|1|EC|A|6858
8EVR|1|EC|U|6859
8EVR|1|EC|A|6860
8EVR|1|EC|G|6861
8EVR|1|EC|G|6862
*
8EVR|1|EC|C|6868
8EVR|1|EC|C|6869
8EVR|1|EC|A|6870
8EVR|1|EC|A|6871
8EVR|1|EC|A|6872
8EVR|1|EC|A|6873
8EVR|1|EC|A|6874
8EVR|1|EC|C|6875
8EVR|1|EC|A|6876

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1