IL_8EVS_011

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_011 not in the Motif Atlas

Geometric match to IL_4M6D_011

Geometric discrepancy: 0.2471

The information below is about IL_4M6D_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8EVS|1|A1|G|172
8EVS|1|A1|G|173
8EVS|1|A1|C|174
*
8EVS|1|A1|G|243
8EVS|1|A1|G|244
8EVS|1|A1|U|245

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A