IL_8EVS_028

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_028 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0952

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EVS|1|A1|C|758
8EVS|1|A1|U|759
8EVS|1|A1|G|760
8EVS|1|A1|A|761
8EVS|1|A1|U|762
8EVS|1|A1|G|763
*
8EVS|1|A1|C|768
8EVS|1|A1|G|769
8EVS|1|A1|G|770
8EVS|1|A1|A|771
8EVS|1|A1|U|772
8EVS|1|A1|G|773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A