IL_8EVS_043

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_043 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1049

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8EVS|1|A1|A|1006
8EVS|1|A1|U|1007
8EVS|1|A1|U|1008
8EVS|1|A1|A|1009
*
8EVS|1|A1|U|1041
8EVS|1|A1|U|1042
8EVS|1|A1|C|1043
8EVS|1|A1|U|1044

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

RPL5 isoform 1

Chain AI

RPL10 isoform 1