IL_8EVS_121

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8EVS|1|A1|A|2941, 8EVS|1|A1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_121 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.08

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8EVS|1|A1|C|2881
8EVS|1|A1|U|2882
*
8EVS|1|A1|A|2940
8EVS|1|A1|A|2941
8EVS|1|A1|C|2942
8EVS|1|A1|G|2943

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A