IL_8EVS_188

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAGGGCC*GGUCUUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|B5|C|484
8EVS|1|B5|A|485
8EVS|1|B5|G|486
8EVS|1|B5|G|487
8EVS|1|B5|G|488
8EVS|1|B5|C|489
8EVS|1|B5|C|490
*
8EVS|1|B5|G|497
8EVS|1|B5|G|498
8EVS|1|B5|U|499
8EVS|1|B5|C|500
8EVS|1|B5|U|501
8EVS|1|B5|U|502
8EVS|1|B5|G|503

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A