IL_8EVS_193

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8EVS|1|B5|A|579, 8EVS|1|B5|U|581, 8EVS|1|B5|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|B5|G|561
8EVS|1|B5|OMG|562
8EVS|1|B5|U|563
8EVS|1|B5|G|564
8EVS|1|B5|C|565
8EVS|1|B5|C|566
8EVS|1|B5|A|567
8EVS|1|B5|G|568
*
8EVS|1|B5|C|575
8EVS|1|B5|G|576
8EVS|1|B5|G|577
8EVS|1|B5|OMU|578
8EVS|1|B5|A|579
8EVS|1|B5|A|580
8EVS|1|B5|U|581
8EVS|1|B5|U|582
8EVS|1|B5|C|583
8EVS|1|B5|C|584

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A

Chain DC

Elongation factor 2