IL_8EVS_217

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_217 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3463

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8EVS|1|EC|U|6892
8EVS|1|EC|C|6893
8EVS|1|EC|C|6894
*
8EVS|1|EC|G|6937
8EVS|1|EC|A|6938

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA