IL_8EVS_239
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8EVS|1|B5|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVS_239 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2134
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8EVS|1|B5|U|893
8EVS|1|B5|U|894
8EVS|1|B5|G|895
8EVS|1|B5|U|896
8EVS|1|B5|C|897
8EVS|1|B5|A|898
8EVS|1|B5|G|899
*
8EVS|1|B5|C|910
8EVS|1|B5|U|911
8EVS|1|B5|U|912
8EVS|1|B5|G|913
8EVS|1|B5|G|914
8EVS|1|B5|A|915
8EVS|1|B5|U|916
8EVS|1|B5|U|917
8EVS|1|B5|U|918
8EVS|1|B5|A|919
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- RPS1A isoform 1
- Chain BO
- 40S ribosomal protein S14-A
Coloring options: