IL_8EVS_241

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUACCAUAG*CAAAAACA

Length

18 nucleotides

Bulged bases

8EVS|1|EC|A|6860, 8EVS|1|EC|A|6873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|EC|U|6852
8EVS|1|EC|G|6853
8EVS|1|EC|U|6854
8EVS|1|EC|A|6855
8EVS|1|EC|C|6856
8EVS|1|EC|C|6857
8EVS|1|EC|A|6858
8EVS|1|EC|U|6859
8EVS|1|EC|A|6860
8EVS|1|EC|G|6861
*
8EVS|1|EC|C|6869
8EVS|1|EC|A|6870
8EVS|1|EC|A|6871
8EVS|1|EC|A|6872
8EVS|1|EC|A|6873
8EVS|1|EC|A|6874
8EVS|1|EC|C|6875
8EVS|1|EC|A|6876

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1