IL_8EVS_244

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

8EVS|1|EC|U|6770, 8EVS|1|EC|U|6771, 8EVS|1|EC|U|6774, 8EVS|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|EC|U|6766
8EVS|1|EC|G|6767
8EVS|1|EC|U|6768
8EVS|1|EC|A|6769
8EVS|1|EC|U|6770
8EVS|1|EC|U|6771
8EVS|1|EC|G|6772
8EVS|1|EC|G|6773
8EVS|1|EC|U|6774
8EVS|1|EC|U|6775
8EVS|1|EC|A|6776
8EVS|1|EC|C|6777
8EVS|1|EC|C|6778
8EVS|1|EC|C|6779
8EVS|1|EC|A|6780
8EVS|1|EC|U|6781
8EVS|1|EC|C|6782
*
8EVS|1|EC|G|6814
8EVS|1|EC|U|6815
8EVS|1|EC|A|6816
8EVS|1|EC|A|6817
8EVS|1|EC|G|6818
8EVS|1|EC|G|6819
8EVS|1|EC|C|6820
8EVS|1|EC|U|6821
8EVS|1|EC|U|6822
8EVS|1|EC|U|6823
8EVS|1|EC|C|6824
8EVS|1|EC|A|6825

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1