IL_8EVT_084

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_084 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.0713

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8EVT|1|A1|C|2196
8EVT|1|A1|OMC|2197
8EVT|1|A1|A|2198
8EVT|1|A1|G|2199
*
8EVT|1|A1|C|2245
8EVT|1|A1|G|2246

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA