IL_8EVT_097

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAGA*UCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAGA,UCUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|A|2438
8EVT|1|A1|A|2439
8EVT|1|A1|G|2440
8EVT|1|A1|A|2441
*
8EVT|1|A1|U|2506
8EVT|1|A1|C|2507
8EVT|1|A1|U|2508
8EVT|1|A1|U|2509

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L36-A

Chain BB

RPS1A isoform 1