IL_8EVT_099

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|C|2444
8EVT|1|A1|A|2445
8EVT|1|A1|U|2446
8EVT|1|A1|A|2447
8EVT|1|A1|G|2448
8EVT|1|A1|A|2449
*
8EVT|1|A1|U|2497
8EVT|1|A1|U|2498
8EVT|1|A1|U|2499
8EVT|1|A1|A|2500
8EVT|1|A1|U|2501
8EVT|1|A1|A|2502
8EVT|1|A1|G|2503

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain E

RPL1A isoform 1