IL_8EVT_101

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

8EVT|1|A1|U|2453, 8EVT|1|A1|A|2458, 8EVT|1|A1|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|G|2452
8EVT|1|A1|U|2453
8EVT|1|A1|G|2454
8EVT|1|A1|U|2455
8EVT|1|A1|A|2456
8EVT|1|A1|G|2457
8EVT|1|A1|A|2458
8EVT|1|A1|A|2459
8EVT|1|A1|U|2460
8EVT|1|A1|A|2461
8EVT|1|A1|A|2462
8EVT|1|A1|G|2463
*
8EVT|1|A1|C|2492
8EVT|1|A1|U|2493
8EVT|1|A1|A|2494
8EVT|1|A1|C|2495

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1